Get the peak list with blank samples' peaks removed — getbgremove • enviGCMS

Get the peak list with blank samples' peaks removed

getbgremove(
  xset,
  method = "medret",
  intensity = "into",
  file = NULL,
  rsdcf = 30,
  inscf = 1000
)

Arguments

xset: the xcmsset object with blank and certain group samples' data
method: parameter for groupval function
intensity: parameter for groupval function
file: file name for further annotation, default NULL
rsdcf: rsd cutoff for peaks, default 30
inscf: intensity cutoff for peaks, default 1000

Value

diff report

Examples

if (FALSE) {
library(faahKO)
cdfpath <- system.file("cdf", package = "faahKO")
xset <- getdata(cdfpath, pmethod = ' ')
getbgremove(xset)
}