Get the features from anova, with p value, q value, rsd and power restriction
Source:R/deprecated.R
getfeaturesanova.Rd
Get the features from anova, with p value, q value, rsd and power restriction
Usage
getfeaturesanova(
list,
power = 0.8,
pt = 0.05,
qt = 0.05,
n = 3,
ng = 3,
rsdcf = 100,
inscf = 5,
imputation = "l",
index = NULL
)
Arguments
- list
list with data as peaks list, mz, rt and group information (more than two groups)
- power
defined power
- pt
p value threshold
- qt
q value threshold, BH adjust
- n
sample numbers in one group
- ng
group numbers
- rsdcf
the rsd cutoff of all peaks in all group
- inscf
Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5
- imputation
parameters for `getimputation` function method
- index
the index of peaks considered, default NULL