Get the csv files from xcmsset/XCMSnExp/list object — getupload • enviGCMS

Get the csv files from xcmsset/XCMSnExp/list object

getupload(
  xset,
  method = "medret",
  value = "into",
  name = "Peaklist",
  type = "m",
  mzdigit = 4,
  rtdigit = 1
)

Arguments

xset: the xcmsset/XCMSnExp/list object which you want to submitted to Metaboanalyst
method: parameter for groupval function
value: parameter for groupval function
name: file name
type: m means Metaboanalyst, a means xMSannotator, o means full information csv
mzdigit: m/z digits of row names of data frame
rtdigit: retention time digits of row names of data frame

Value

dataframe with data needed for Metaboanalyst/xMSannotator/pmd if your want to perform local analysis.

See also

getdata, getmzrt

Examples

if (FALSE) {
library(faahKO)
cdfpath <- system.file('cdf', package = 'faahKO')
xset <- getdata(cdfpath, pmethod = ' ')
getupload(xset)
}