Get the mzrt profile and group information for batch correction and plot as a list directly from path with default setting

getmr(
  path,
  index = FALSE,
  BPPARAM = BiocParallel::SnowParam(),
  pmethod = "hplcorbitrap",
  minfrac = 0.67,
  ...
)

Arguments

path: the path to your data
index: the index of the files
BPPARAM: used for BiocParallel package
pmethod: parameters used for different instrumentals such as 'hplcorbitrap', 'uplcorbitrap', 'hplcqtof', 'hplchqtof', 'uplcqtof', 'uplchqtof'. The parameters were from the references
minfrac: minimum fraction of samples necessary in at least one of the sample groups for it to be a valid group, default 0.67
...: arguments for xcmsSet function

list with rtmz profile and group infomation

if (FALSE) {
library(faahKO)
cdfpath <- system.file('cdf', package = 'faahKO')
list <- getmr(cdfpath, pmethod = ' ')
}